Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MYP_175 | MYP_2629 | MYP_175 | MYP_2629 | Signal transduction histidine kinase. | Hypothetical protein. | 0.786 |
MYP_175 | MYP_289 | MYP_175 | MYP_289 | Signal transduction histidine kinase. | GAF sensor hybrid histidine kinase. | 0.999 |
MYP_175 | MYP_3738 | MYP_175 | MYP_3738 | Signal transduction histidine kinase. | Cyclic nucleotide-binding protein. | 0.706 |
MYP_175 | MYP_4314 | MYP_175 | MYP_4314 | Signal transduction histidine kinase. | helix-turN-helix, arac domain. | 0.467 |
MYP_175 | MYP_4782 | MYP_175 | MYP_4782 | Signal transduction histidine kinase. | Hypothetical protein CHU_0331. | 0.786 |
MYP_175 | MYP_4783 | MYP_175 | MYP_4783 | Signal transduction histidine kinase. | Hypothetical protein. | 0.786 |
MYP_2629 | MYP_175 | MYP_2629 | MYP_175 | Hypothetical protein. | Signal transduction histidine kinase. | 0.786 |
MYP_2629 | MYP_289 | MYP_2629 | MYP_289 | Hypothetical protein. | GAF sensor hybrid histidine kinase. | 0.851 |
MYP_2629 | MYP_4314 | MYP_2629 | MYP_4314 | Hypothetical protein. | helix-turN-helix, arac domain. | 0.538 |
MYP_289 | MYP_175 | MYP_289 | MYP_175 | GAF sensor hybrid histidine kinase. | Signal transduction histidine kinase. | 0.999 |
MYP_289 | MYP_2629 | MYP_289 | MYP_2629 | GAF sensor hybrid histidine kinase. | Hypothetical protein. | 0.851 |
MYP_289 | MYP_3738 | MYP_289 | MYP_3738 | GAF sensor hybrid histidine kinase. | Cyclic nucleotide-binding protein. | 0.817 |
MYP_289 | MYP_4314 | MYP_289 | MYP_4314 | GAF sensor hybrid histidine kinase. | helix-turN-helix, arac domain. | 0.728 |
MYP_289 | MYP_4782 | MYP_289 | MYP_4782 | GAF sensor hybrid histidine kinase. | Hypothetical protein CHU_0331. | 0.851 |
MYP_289 | MYP_4783 | MYP_289 | MYP_4783 | GAF sensor hybrid histidine kinase. | Hypothetical protein. | 0.851 |
MYP_3356 | MYP_4314 | MYP_3356 | MYP_4314 | Hypothetical protein. | helix-turN-helix, arac domain. | 0.463 |
MYP_3738 | MYP_175 | MYP_3738 | MYP_175 | Cyclic nucleotide-binding protein. | Signal transduction histidine kinase. | 0.706 |
MYP_3738 | MYP_289 | MYP_3738 | MYP_289 | Cyclic nucleotide-binding protein. | GAF sensor hybrid histidine kinase. | 0.817 |
MYP_3738 | MYP_4314 | MYP_3738 | MYP_4314 | Cyclic nucleotide-binding protein. | helix-turN-helix, arac domain. | 0.423 |
MYP_3738 | rpoA | MYP_3738 | MYP_1354 | Cyclic nucleotide-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.550 |
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