STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_4528ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (609 aa)    
Predicted Functional Partners:
MYP_2185
Hypothetical protein.
 
 0.998
MYP_1372
Dipeptide transport system permease protein dppB.
 
 0.986
MYP_1661
Peptide ABC transporter substrate-binding protein.
 
 0.929
rnr
Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.782
MYP_4526
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.780
MYP_4525
Protease.
       0.762
MYP_2095
Hypothetical protein CHU_3756.
  
 
 0.750
MYP_590
Asparaginase.
 
  
 0.691
MYP_4529
3'-5' exonuclease.
       0.644
MYP_146
Nitrate ABC transporter permease.
 
  
  0.642
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.