Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MYP_4792Cytochrome c-type biogenesis protein CcmC; Putative heme lyase for CcmE. (228 aa)    
Predicted Functional Partners:
MYP_4791
ABC transporter permease.
 
 0.999
MYP_4794
Cytochrome C biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.997
MYP_4795
Cytochrome c-type biogenesis protein.
 
  
 0.961
MYP_4793
Hypothetical protein.
 
     0.878
MYP_3789
ABC transporter ATP-binding protein.
 
  
  0.695
MYP_933
uroporphyrinogen-III synthase.
  
    0.682
MYP_4796
Hypothetical protein.
       0.656
MYP_4797
Hypothetical protein CHU_3312.
       0.648
MYP_4752
Molybdopterin oxidoreductase.
 
   
 0.621
MYP_4798
Geranylgeranylglycerol-phosphate geranylgeranyltransferase.
       0.619
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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