STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (216 aa)    
Predicted Functional Partners:
MYP_408
Hypothetical protein Cpha266_1098.
 
 0.995
MYP_4426
Hypothetical protein.
 
 0.995
MYP_3496
Hypothetical protein.
  
 0.994
MYP_266
Hypothetical protein.
   
 
 0.759
MYP_267
Gliding motility-like protein.
   
 
 0.759
MYP_407
Hypothetical protein Cpha266_1097.
   
 
 0.759
MYP_4268
Outer membrane lipoprotein carrier protein LolA.
   
 
 0.759
MYP_147
Nitrate ABC transporter.
 
    
 0.758
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.727
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
     0.723
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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