STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK75344.1Phytoene desaturase. (511 aa)    
Predicted Functional Partners:
AMK75343.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.835
AMK75342.1
Diapolycopene oxygenase.
 
    
0.821
AMK77858.1
Phytoene synthase.
 
  
 0.779
AMK78407.1
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
  
 0.602
AMK78105.1
FAD-binding protein; Belongs to the DNA photolyase family.
 
  
 0.597
AMK77519.1
Hypothetical protein.
  
  
 0.525
AMK75341.1
Hypothetical protein.
       0.423
AMK74973.1
Oxidoreductase.
 
  
 0.405
AMK75350.1
Heme-binding protein.
 
     0.400
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.