STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK75481.1TraK protein. (325 aa)    
Predicted Functional Partners:
AMK75479.1
Conjugal transfer protein TraL.
       0.784
AMK75480.1
TraE protein.
       0.784
AMK75482.1
Conjugal transfer protein TrbI.
       0.784
AMK75484.1
Conjugal transfer protein TraV.
     
 0.700
AMK75483.1
Disulfide bond isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
       0.682
AMK75485.1
Pili assembly chaperone.
       0.468
AMK75487.1
Conjugal transfer protein TraC.
       0.452
AMK75489.1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.451
AMK75486.1
Hypothetical protein.
       0.426
AMK75488.1
Hypothetical protein.
       0.426
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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