STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK75941.1Type I restriction endonuclease subunit M. (502 aa)    
Predicted Functional Partners:
AMK75940.1
Hypothetical protein.
 
 0.988
AMK75937.1
Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.987
AMK75942.1
Hypothetical protein.
 
 
 0.982
AMK75497.1
Hypothetical protein.
 
 
 0.953
AMK75495.1
DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.946
AMK75936.1
Hypothetical protein.
 
     0.944
AMK75500.1
Hypothetical protein.
 
 
 0.921
AMK79359.1
Restriction endonuclease subunit S.
 
 0.820
AMK75939.1
Nucleotidyltransferase.
       0.779
AMK75602.1
Hypothetical protein.
 
 
 0.778
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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