Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMK76220.1 | AMK76222.1 | JT25_006895 | JT25_006905 | Histidine triad nucleotide-binding protein. | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.830 |
| AMK76220.1 | AMK76225.1 | JT25_006895 | JT25_006925 | Histidine triad nucleotide-binding protein. | Hydrolase. | 0.452 |
| AMK76220.1 | dnaX | JT25_006895 | JT25_006910 | Histidine triad nucleotide-binding protein. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.784 |
| AMK76220.1 | recR | JT25_006895 | JT25_006900 | Histidine triad nucleotide-binding protein. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.833 |
| AMK76222.1 | AMK76220.1 | JT25_006905 | JT25_006895 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Histidine triad nucleotide-binding protein. | 0.830 |
| AMK76222.1 | AMK76225.1 | JT25_006905 | JT25_006925 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hydrolase. | 0.459 |
| AMK76222.1 | AMK77333.1 | JT25_006905 | JT25_012735 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. | 0.571 |
| AMK76222.1 | AMK78964.1 | JT25_006905 | JT25_021165 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.450 |
| AMK76222.1 | acpP | JT25_006905 | JT25_015385 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.535 |
| AMK76222.1 | dnaX | JT25_006905 | JT25_006910 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.976 |
| AMK76222.1 | recR | JT25_006905 | JT25_006900 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.993 |
| AMK76222.1 | rimP | JT25_006905 | JT25_017340 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Ribosome maturation protein RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.581 |
| AMK76222.1 | tig | JT25_006905 | JT25_016190 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.481 |
| AMK76222.1 | valS | JT25_006905 | JT25_008005 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.491 |
| AMK76225.1 | AMK76220.1 | JT25_006925 | JT25_006895 | Hydrolase. | Histidine triad nucleotide-binding protein. | 0.452 |
| AMK76225.1 | AMK76222.1 | JT25_006925 | JT25_006905 | Hydrolase. | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.459 |
| AMK76225.1 | dnaX | JT25_006925 | JT25_006910 | Hydrolase. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.423 |
| AMK76225.1 | recR | JT25_006925 | JT25_006900 | Hydrolase. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.470 |
| AMK77333.1 | AMK76222.1 | JT25_012735 | JT25_006905 | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.571 |
| AMK78964.1 | AMK76222.1 | JT25_021165 | JT25_006905 | Hypothetical protein. | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.450 |
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