STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK76372.1Radical SAM protein. (323 aa)    
Predicted Functional Partners:
AMK76380.1
Methyltransferase type 11.
     0.979
AMK76369.1
Hypothetical protein.
 
     0.953
AMK76371.1
Glycosyl transferase.
 
     0.952
AMK76370.1
Sterol desaturase.
 
     0.886
AMK76374.1
Hypothetical protein.
 
   
 0.868
AMK76373.1
Hypothetical protein.
 
     0.839
JT25_003335
RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; internal stop.
 
     0.761
AMK76375.1
Hypothetical protein.
 
     0.729
AMK78412.1
Fatty acid hydroxylase.
 
     0.451
AMK76376.1
Antibiotic biosynthesis monooxygenase.
       0.407
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.