STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK76896.1Carbohydrate-binding protein. (156 aa)    
Predicted Functional Partners:
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.967
AMK76588.1
Hypothetical protein.
    
 0.963
AMK76494.1
Cholesterol oxidase.
    
 0.793
JT25_000660
Crp/Fnr family transcriptional regulator; Incomplete; partial on complete genome; missing start.
    
 0.748
AMK75772.1
Hypothetical protein.
    
 0.748
AMK75871.1
Hypothetical protein.
    
 0.748
AMK77113.1
Hypothetical protein.
    
 0.748
AMK77137.1
Hypothetical protein.
    
 0.748
AMK77507.1
Hypothetical protein.
    
 0.748
AMK77801.1
Hypothetical protein.
    
 0.748
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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