STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK77605.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
AMK77599.1
Protein nirF.
       0.658
AMK77600.1
AsnC family transcriptional regulator.
       0.658
AMK77601.1
Protein nirL.
       0.658
AMK77602.1
Protein nirG.
       0.658
AMK77603.1
Protein nirH.
       0.658
AMK77604.1
Heme d1 biosynthesis radical SAM protein NirJ.
       0.658
AMK77596.1
Cytochrome C.
       0.472
AMK77597.1
Cytochrome C.
       0.472
AMK77598.1
Cytochrome C55X precursor NirC.
       0.472
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.