STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK77628.1Flavoprotein. (242 aa)    
Predicted Functional Partners:
AMK77627.1
Chemotaxis protein.
       0.665
AMK79232.1
Hypothetical protein.
  
  
 0.582
AMK78995.1
Coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.547
AMK77630.1
Phosphate starvation-inducible protein PhoH.
   
   0.546
AMK74955.1
Bacteriohemerythrin.
   
  
 0.545
AMK77194.1
Conjugal transfer protein TraR.
   
    0.529
AMK76178.1
Hypothetical protein.
  
     0.518
miaB
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.518
ybeY
rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.518
AMK77632.1
Magnesium/cobalt efflux protein; Involved in the transport of magnesium and cobalt ions.
       0.518
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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