STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK78133.1LuxR family transcriptional regulator. (309 aa)    
Predicted Functional Partners:
AMK76823.1
Hypothetical protein.
 
 
 0.961
AMK77414.1
Hypothetical protein.
 
 0.942
AMK76122.1
Hypothetical protein.
 
 
0.940
AMK79048.1
Response regulator receiver protein.
 
 
0.932
AMK78132.1
Hybrid sensor histidine kinase/response regulator.
 
 
0.919
AMK78836.1
Hybrid sensor histidine kinase/response regulator.
 
 
 0.914
AMK76769.1
Diguanylate cyclase.
 
  
 0.909
AMK76309.1
Hypothetical protein.
 
 
 0.907
AMK75148.1
Diguanylate cyclase.
 
 
  
 0.903
AMK75715.1
Hybrid sensor histidine kinase/response regulator.
 
0.895
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.