STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK78341.1Hypothetical protein. (3374 aa)    
Predicted Functional Partners:
AMK78342.1
Flagellar motor protein MotA.
 
    0.878
AMK78345.1
Hypothetical protein.
 
  
 0.857
AMK78344.1
TonB-dependent receptor.
 
     0.844
AMK78340.1
Peptidase S9.
 
 
 0.840
AMK78343.1
Biopolymer transporter ExbD.
 
    0.816
AMK78031.1
Hypothetical protein.
  
     0.711
JT25_008590
Among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; incomplete; partial on complete genome; missing start.
  
     0.652
AMK79260.1
Hypothetical protein.
  
     0.580
AMK79215.1
Peptidase.
  
     0.563
AMK75423.1
Aminoglycoside phosphotransferase.
  
     0.529
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.