STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK78353.1Transposase. (117 aa)    
Predicted Functional Partners:
AMK78352.1
Transposase.
     0.828
AMK78351.1
Sugar transporter.
       0.544
AMK78349.1
Lipopolysaccharide biosynthesis protein.
       0.495
AMK78350.1
Hypothetical protein.
       0.495
AMK78348.1
Exopolysaccharide biosynthesis protein.
       0.469
AMK78354.1
Type III effector.
       0.406
AMK78355.1
FAD-dependent oxidoreductase.
       0.406
AMK78356.1
SAM-dependent methyltransferase.
       0.406
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.