STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK78394.1General secretion pathway protein GspM. (192 aa)    
Predicted Functional Partners:
AMK78395.1
Fimbrial assembly protein.
 
     0.957
AMK78397.1
Hypothetical protein.
 
   
 0.957
AMK78396.1
General secretion pathway protein GspK.
 
   
 0.955
AMK78398.1
General secretion pathway protein GspH.
 
   
 0.954
AMK78399.1
Type II secretion system protein GspH.
 
     0.954
AMK78392.1
Type II secretion system protein GspD.
 
     0.952
AMK78337.1
Hypothetical protein.
     
  0.900
AMK78400.1
Type II secretion system protein GspG.
 
   
 0.851
AMK78393.1
Hypothetical protein.
     
 0.848
AMK78401.1
General secretion pathway protein GspF.
 
     0.740
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.