STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK79145.1Hypothetical protein. (392 aa)    
Predicted Functional Partners:
AMK79144.1
ATP synthase.
 
     0.953
AMK79142.1
Hypothetical protein.
 
   
 0.881
AMK77217.1
Alpha-2-macroglobulin.
  
     0.699
AMK75502.1
Hypothetical protein.
  
     0.662
AMK79146.1
Hypothetical protein.
       0.642
AMK77647.1
Hypothetical protein.
  
     0.591
AMK78019.1
Hypothetical protein.
  
     0.579
AMK78333.1
Type II secretion system protein GspI.
  
     0.495
AMK79341.1
Mating pair stabilization protein TraN.
  
     0.482
AMK75492.1
Mating pair stabilization protein TraN.
  
     0.479
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.