STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK79338.1Signal peptidase I; Belongs to the peptidase S26 family. (187 aa)    
Predicted Functional Partners:
AMK79336.1
Conjugal transfer protein TraC.
 
   
 0.952
AMK79339.1
Conjugal transfer protein.
 
     0.949
AMK79340.1
Conjugal transfer protein TraU.
 
     0.949
AMK79341.1
Mating pair stabilization protein TraN.
 
     0.949
AMK79332.1
Disulfide bond isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
   
 0.886
AMK79331.1
Conjugal transfer protein TrbI.
 
     0.860
AMK75487.1
Conjugal transfer protein TraC.
 
   
 0.797
AMK75443.1
Conjugal transfer protein TraG.
 
     0.785
AMK75444.1
Conjugal transfer protein.
 
     0.785
AMK75482.1
Conjugal transfer protein TrbI.
 
     0.785
Your Current Organism:
Methylomonas denitrificans
NCBI taxonomy Id: 1538553
Other names: M. denitrificans, Methylomonas sp. FJG1, strain FJG1
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