STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL01_00065Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
    0.937
bamA
Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.922
AL01_08430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.886
AL01_07265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.883
AL01_00185
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.784
AL01_06630
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.784
AL01_00190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
AL01_05740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
AL01_06050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
AL01_02980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
Your Current Organism:
Bombella intestini
NCBI taxonomy Id: 1539051
Other names: Acetobacteraceae bacterium R-52487, B. intestini, Bombella intestini Li et al. 2015, DSM 28636, LMG 28161, LMG:28161, strain R-52487
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.