STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL01_03190Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)    
Predicted Functional Partners:
AL01_03195
Type IV secretion system protein VirB9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AL01_03220
Type IV secretion system protein VirB4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.982
AL01_03185
Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.977
AL01_03180
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.971
AL01_03200
Type IV secretion system protein VirB8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.954
AL01_03210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.920
AL01_03225
Type IV secretion system protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.879
AL01_03235
Transport secretion system IV VirB1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.866
AL01_03230
Type IV secretion system pilin subunit VirB2; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.679
AL01_06925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.652
Your Current Organism:
Bombella intestini
NCBI taxonomy Id: 1539051
Other names: Acetobacteraceae bacterium R-52487, B. intestini, Bombella intestini Li et al. 2015, DSM 28636, LMG 28161, LMG:28161, strain R-52487
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.