STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (805 aa)    
Predicted Functional Partners:
AL01_00185
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.977
AL01_04865
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.958
AL01_04875
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.938
AL01_04880
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
rsmA
16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
    0.877
AL01_00065
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.764
AL01_00190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.734
AL01_07455
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
AL01_01865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.722
AL01_00180
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.712
Your Current Organism:
Bombella intestini
NCBI taxonomy Id: 1539051
Other names: Acetobacteraceae bacterium R-52487, B. intestini, Bombella intestini Li et al. 2015, DSM 28636, LMG 28161, LMG:28161, strain R-52487
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.