Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORW18941.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
ORW18997.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.953
ORW18942.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.951
ORW18943.1
Peptidase M52; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.905
ORW18944.1
Cytochrome-c3 hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
ORW18945.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.862
ORW18998.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.802
ORW18940.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
ORW18947.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.662
AWC19_19470
Polymerase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.596
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.572
Your Current Organism:
Mycobacterium palustre
NCBI taxonomy Id: 153971
Other names: ATCC BAA-377, DSM 44572, M. palustre, Mycobacterium palustre Torkko et al. 2002, strain E846
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