STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtESecretion protein HlyD family protein. (579 aa)    
Predicted Functional Partners:
macB_1
ABC-type antimicrobial peptide transport system%2C permease component.
 
 
 0.991
macB_2
ABC transporter.
 
 0.970
macB_7
ABC-type antimicrobial peptide transport system%2C permease component.
 
 
 0.968
macB_9
ABC-type antimicrobial peptide transport system%2C permease component.
 
 
 0.959
macB_10
ABC-type antimicrobial peptide transport system%2C permease component.
 
 
 0.959
CUN55059.1
S-layer protein.
 
     0.946
swrC
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.939
macB_6
ABC-type antimicrobial peptide transport system%2C ATPase component.
 
 0.893
macB_8
ABC transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 0.849
porA_1
Pyruvate ferredoxin/flavodoxin oxidoreductase.
   
 
 0.830
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.