STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpB_1ABC transporter permease. (264 aa)    
Predicted Functional Partners:
ssuB3_1
Aliphatic sulfonates ABC transporter ATP-binding protein SsuB.
 
 0.976
ssuB_2
ABC-type nitrate/sulfonate/bicarbonate transport system%2C ATPase component.
 
 0.955
cmpD_4
Taurine-transporting AtPase.
 
 0.900
cmpC
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
 
 0.900
cmpD_1
ABC-type nitrate/sulfonate/bicarbonate transport system%2C ATPase component.
 
 0.898
cmpD_2
Taurine-transporting AtPase.
 
 0.898
ssuB3_2
Aliphatic sulfonates ABC transporter ATP-binding protein SsuB.
 
 0.883
ssuA_1
ABC transporter%2C substrate-binding protein%2C aliphatic sulfonates family.
 
 
 0.877
tauA_1
ABC transporter%2C substrate-binding protein%2C aliphatic sulfonates family.
 
 
 0.875
ssuB_4
ABC-type nitrate/sulfonate/bicarbonate transport system%2C ATPase component.
 
 0.869
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.