STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capD_2Predicted nucleoside-diphosphate sugar epimerases. (639 aa)    
Predicted Functional Partners:
arnB_2
DegT/DnrJ/EryC1/StrS aminotransferase.
 
 0.958
arnB_3
TDP-4-oxo-6-deoxy-D-glucose transaminase.
 
 0.947
arnB_1
DegT/DnrJ/EryC1/StrS aminotransferase.
 
 0.928
cpsD_1
Capsular exopolysaccharide family.
 
 
 0.890
CUO15850.1
Exopolysaccharide tyrosine-protein kinase.
 
  
 0.862
wbbL_1
Family 2 glycosyl transferase.
  
 
 0.858
wcaJ_2
Undecaprenyl-phosphate galactose phosphotransferase.
 
 0.852
hyaD_7
Family 2 glycosyl transferase.
  
 
 0.842
glmU
UDP-N-acetylglucosamine pyrophosphorylase.
    
 0.840
mshA_1
Group 1 glycosyl transferase.
 
  
 0.800
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.