STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yicJ_1Sugar (glycoside-pentoside-hexuronide) transporter. (450 aa)    
Predicted Functional Partners:
bglF_1
PTS system glucose subfamily transporter subunit IIA.
 
      0.815
ptsG_3
PTS system glucose-specific EIICBA component PtsG.
 
      0.777
bglB_2
Glycoside hydrolase family protein.
       0.773
CUO26278.1
Putative sulfatase.
       0.746
CUO26314.1
Sulfatase family protein.
       0.746
nrdA
Ribonucleoside-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.676
xynB_4
Xylan 1%2C4-beta-xylosidase.
 
  
 0.463
xynB_1
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.447
ccpA_3
LacI family transcriptional regulator.
       0.424
CUO26184.1
Radical SAM protein.
       0.400
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.