STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpA_34Binding-protein-dependent transport systems inner membrane component. (298 aa)    
Predicted Functional Partners:
lplC2
Protein LplC.
 
   0.944
lipO7_2
Lipoprotein LipO.
 
 
 0.916
ycjP_103
Binding-protein-dependent transport system inner membrane protein.
  
  0.880
ycjP_51
Sugar ABC transporter permease.
 
  0.879
CUP20568.1
Extracellular solute-binding protein.
 
 
 0.853
lipO_8
Putative ABC-type sugar transport system%2C periplasmic component.
 
 
  0.842
lipO_10
Family 1 extracellular solute-binding protein.
 
 
  0.842
lipO_9
Extracellular solute-binding protein.
 
  0.841
ycjP_21
ABC-type sugar transport system%2C permease component.
 
  0.835
ycjP_35
Binding-protein-dependent transport systems inner membrane component.
  
  0.835
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.