STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpA_37Binding-protein-dependent transport system inner membrane protein. (307 aa)    
Predicted Functional Partners:
cycB_5
Extracellular solute-binding protein.
 
  0.992
ycjP_43
Binding-protein-dependent transport system inner membrane protein.
 
  0.962
ycjP_120
Carbohydrate ABC transporter membrane protein 2%2C CUT1 family.
  
  0.824
ycjP_82
Carbohydrate ABC transporter membrane protein 2%2C CUT1 family.
  
  0.821
ycjP_8
ABC transporter permease.
  
  0.810
ycjP_34
Carbohydrate ABC transporter membrane protein 2%2C CUT1 family.
  
  0.809
ycjP_112
Carbohydrate ABC transporter membrane protein 2%2C CUT1 family.
  
  0.804
ycjP_15
ABC transporter permease.
  
  0.793
yesO_11
ABC-type sugar transport system%2C periplasmic component.
  
  0.792
ebgA_1
Glycoside hydrolase.
 
    0.782
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.