STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO44016.1DNA-binding transcriptional repressor ExuR. (480 aa)    
Predicted Functional Partners:
barA_8
Signal transduction histidine kinase.
 
     0.814
porA_1
Pyruvate ferredoxin/flavodoxin oxidoreductase.
    
  0.806
CUO91664.1
Membrane protein.
  
     0.773
rpfC_2
His Kinase A (phosphoacceptor) domain./Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase./Response regulator receiver domain.
  
   
 0.757
rpfG_6
Signaling protein.
  
   
 0.751
CUN64510.1
Uncharacterised protein.
  
     0.749
rpfG_1
Signaling protein.
  
   
 0.748
barA_4
Signal transduction histidine kinase.
  
   
 0.748
luxQ_2
His Kinase A (phosphoacceptor) domain./Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase./Response regulator receiver domain.
  
   
 0.726
gmr_2
Signaling protein.
  
     0.696
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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