STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spaFLantibiotic ABC transporter ATP-binding protein. (233 aa)    
Predicted Functional Partners:
CUO79883.1
Lantibiotic ABC transporter permease.
 
 0.967
CUO79861.1
Lantibiotic ABC transporter permease.
 
 
 0.966
rbsC_1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
  0.918
yycG_4
Lantibiotic resistance two-component sensor kinase.
 
   
 0.908
macB_4
ABC transporter.
 
  
0.871
CUO03236.1
Permease.
 
 
 0.859
CUO03155.1
Permease.
 
 
 0.858
yycF_4
Lantibiotic resistance two-component response regulator.
 
    0.851
ssuB_1
ABC transporter.
 
 
 
0.745
phoR_4
Putative lantibiotic biosynthesis sensor histidine kinase.
 
     0.728
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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