STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdaR_3CdaR family transcriptional regulator. (392 aa)    
Predicted Functional Partners:
cheR_2
Chemotaxis protein CheR.
    
  0.807
ygbN_3
Gluconate transporter.
 
   
 0.735
flr_2
Flavin reductase domain-containing FMN-binding protein.
       0.714
aroK_2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.714
ppaC
Inorganic diphosphatase.
       0.668
rpfC_1
Histidine kinase.
    
  0.657
cqsS
His Kinase A (phosphoacceptor) domain./Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase./Response regulator receiver domain.
    
  0.657
luxQ_2
His Kinase A (phosphoacceptor) domain./Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase./Response regulator receiver domain.
    
  0.652
rpfC_2
His Kinase A (phosphoacceptor) domain./Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase./Response regulator receiver domain.
    
  0.652
barA_4
Signal transduction histidine kinase.
    
  0.652
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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