STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nag3_4Beta-hexosamidase A. (570 aa)    
Predicted Functional Partners:
ampH
Penicillin-binding protein.
  
 
 0.728
ycjP_94
Binding-protein-dependent transport system inner membrane protein.
       0.727
ugpA_71
Binding-protein-dependent transport system inner membrane protein.
       0.702
ugl_8
Glycosyl hydrolase family protein.
       0.668
CUP03195.1
Uncharacterised protein.
 
     0.600
CUO55622.1
Phosphatase.
     0.598
ulaG_2
L-ascorbate 6-phosphate lactonase.
 
     0.587
CUN93900.1
NagC/XylR family transcriptional regulators.
  
    0.558
CUP10769.1
BadF/BadG/BcrA/BcrD type ATPase.
  
    0.558
exo
Glycosyl hydrolase.
    
 0.551
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.