STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_11ABC transporter ATP-binding protein. (289 aa)    
Predicted Functional Partners:
CUP21652.1
Putative transmembrane protein.
 
 0.973
CUO02433.1
Putative transmembrane protein.
 0.873
sigV_3
Sigma factor-like protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.837
CUP21602.1
Uncharacterised protein.
       0.773
CUN88876.1
ABC transporter.
 
 0.672
ybhF_12
ABC transporter ATPase.
 
  
0.668
artQ_1
Polar amino acid ABC transporter inner membrane subunit.
   
 0.630
CUP16127.1
ABC transporter permease.
 
 0.622
CUO27520.1
ABC transporter.
  
 
 0.607
CUO19051.1
ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.
  
 0.599
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.