STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydF[FeFe]-hydrogenase maturation protein HydF. (406 aa)    
Predicted Functional Partners:
hydE
[FeFe]-hydrogenase maturation protein HydE.
   
 0.989
hydG
[FeFe]-hydrogenase maturation protein HydG.
  
 0.977
nuoG
NADH-quinone oxidoreductase subunit G.
 
   
 0.687
hndD_2
NADP-reducing hydrogenase subunit HndC.
 
   
 0.686
gpsA
Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.664
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.594
cmk
Cytidylate kinase.
  
  
 0.579
typA
GTP-binding protein TypA/BipA.
  
  
 0.577
AIO18212.1
Iron hydrogenase 1.
  
   
 0.576
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
     
 0.519
Your Current Organism:
Izimaplasma sp. HR1
NCBI taxonomy Id: 1541959
Other names: C. Izimaplasma sp. HR1, Candidatus Izimaplasma sp. HR1, Mollicutes bacterium HR1
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