glnM protein (Izimaplasma sp. HR1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

glnM

Putative glutamine ABC transporter permease protein GlnM. (255 aa)

Predicted Functional Partners:

artM

0.981

artP_3

0.964

glnQ_1

0.921

glnQ_2

0.921

artP_1

0.861

artP_2

0.853

artQ_2

0.546

artQ_1

0.533

sarZ

0.518

znuB

0.446

Your Current Organism:

Izimaplasma sp. HR1

NCBI taxonomy Id: 1541959
Other names: C. Izimaplasma sp. HR1, Candidatus Izimaplasma sp. HR1, Mollicutes bacterium HR1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
artM	artP_1	KQ51_01616	KQ51_01184	Arginine transport ATP-binding protein ArtM.	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	0.845
artM	artP_2	KQ51_01616	KQ51_01206	Arginine transport ATP-binding protein ArtM.	Arginine-binding extracellular protein ArtP precursor.	0.819
artM	artP_3	KQ51_01616	KQ51_01618	Arginine transport ATP-binding protein ArtM.	Arginine-binding extracellular protein ArtP precursor.	0.963
artM	artQ_1	KQ51_01616	KQ51_01186	Arginine transport ATP-binding protein ArtM.	Arginine transport system permease protein ArtQ.	0.990
artM	artQ_2	KQ51_01616	KQ51_01205	Arginine transport ATP-binding protein ArtM.	Arginine transport system permease protein ArtQ.	0.947
artM	glnM	KQ51_01616	KQ51_01617	Arginine transport ATP-binding protein ArtM.	Putative glutamine ABC transporter permease protein GlnM.	0.981
artM	sarZ	KQ51_01616	KQ51_01619	Arginine transport ATP-binding protein ArtM.	HTH-type transcriptional regulator SarZ.	0.519
artP_1	artM	KQ51_01184	KQ51_01616	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	Arginine transport ATP-binding protein ArtM.	0.845
artP_1	artQ_1	KQ51_01184	KQ51_01186	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	Arginine transport system permease protein ArtQ.	0.999
artP_1	artQ_2	KQ51_01184	KQ51_01205	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	Arginine transport system permease protein ArtQ.	0.984
artP_1	glnM	KQ51_01184	KQ51_01617	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	Putative glutamine ABC transporter permease protein GlnM.	0.861
artP_1	glnQ_1	KQ51_01184	KQ51_01185	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	Glutamine transport ATP-binding protein GlnQ.	0.962
artP_1	glnQ_2	KQ51_01184	KQ51_01204	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	Glutamine transport ATP-binding protein GlnQ.	0.847
artP_2	artM	KQ51_01206	KQ51_01616	Arginine-binding extracellular protein ArtP precursor.	Arginine transport ATP-binding protein ArtM.	0.819
artP_2	artQ_1	KQ51_01206	KQ51_01186	Arginine-binding extracellular protein ArtP precursor.	Arginine transport system permease protein ArtQ.	0.984
artP_2	artQ_2	KQ51_01206	KQ51_01205	Arginine-binding extracellular protein ArtP precursor.	Arginine transport system permease protein ArtQ.	0.999
artP_2	glnM	KQ51_01206	KQ51_01617	Arginine-binding extracellular protein ArtP precursor.	Putative glutamine ABC transporter permease protein GlnM.	0.853
artP_2	glnQ_1	KQ51_01206	KQ51_01185	Arginine-binding extracellular protein ArtP precursor.	Glutamine transport ATP-binding protein GlnQ.	0.836
artP_2	glnQ_2	KQ51_01206	KQ51_01204	Arginine-binding extracellular protein ArtP precursor.	Glutamine transport ATP-binding protein GlnQ.	0.992
artP_3	artM	KQ51_01618	KQ51_01616	Arginine-binding extracellular protein ArtP precursor.	Arginine transport ATP-binding protein ArtM.	0.963