STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_7313Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase. (296 aa)    
Predicted Functional Partners:
TRAPUB_2259
Diacetyl reductase [(S)-acetoin forming]; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.728
TRAPUB_4478
Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.
   
 
 0.706
TRAPUB_9128
Non-specific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.688
TRAPUB_13302
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
  0.648
TRAPUB_583
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 0.642
TRAPUB_2157
Peroxisomal targeting signal receptor.
    
 0.632
TRAPUB_13061
Peroxisomal targeting signal 1 receptor.
    
 0.632
TRAPUB_367
3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic.
  
 
 0.628
TRAPUB_8185
Protein bud22.
   
 
 0.602
TRAPUB_2440
Ubiquitin-40S ribosomal protein S27a.
    
  0.601
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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