STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_6876GPI-anchor transamidase. (851 aa)    
Predicted Functional Partners:
TRAPUB_3084
GPI transamidase component gaa1.
    
 0.998
TRAPUB_1577
GPI transamidase component PIG-S.
   
 0.998
TRAPUB_11486
GPI transamidase component PIG-T.
   
 0.998
TRAPUB_13097
Uncharacterized protein.
    
 0.994
TRAPUB_10624
Uncharacterized protein.
    
 0.910
TRAPUB_5309
GPI ethanolamine phosphate transferase 3.
    
 0.905
TRAPUB_3937
3-ketodihydrosphingosine reductase TSC10.
   
 
 0.891
TRAPUB_12994
3-ketodihydrosphingosine reductase TSC10.
   
 
 0.891
TRAPUB_3241
Phosphatidylinositol-glycan biosynthesis class F protein.
   
 
 0.862
TRAPUB_10888
GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins.
    
 0.860
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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