STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_6756WD repeat-containing protein slp1. (518 aa)    
Predicted Functional Partners:
TRAPUB_4549
Mitotic spindle assembly checkpoint protein MAD2A.
   
 0.982
TRAPUB_3341
Spindle assembly checkpoint component mad1.
  
 
 0.966
TRAPUB_217
Cell division cycle protein 27-like protein.
   
 0.966
TRAPUB_1130
Mitotic checkpoint protein BUB3.1.
  
 0.965
TRAPUB_7003
Anaphase-promoting complex subunit cut9.
   
 0.964
TRAPUB_4235
Negative regulator of mitosis.
    
 0.961
TRAPUB_10491
Uncharacterized protein.
    
 0.960
TRAPUB_1036
Anaphase-promoting complex subunit 2; Belongs to the cullin family.
    
 0.958
TRAPUB_12025
Checkpoint serine/threonine-protein kinase bub1.
   
 0.957
TRAPUB_1411
ANAPC5 domain-containing protein.
    
 0.956
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.