STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_6713Splicing factor 3A subunit 2. (220 aa)    
Predicted Functional Partners:
TRAPUB_206
Splicing factor 3A subunit 1.
   
 0.998
TRAPUB_10420
Splicing factor 3B subunit 4.
   
 0.998
TRAPUB_10930
Pre-mRNA-splicing factor sap61.
    
 0.997
TRAPUB_4559
U2 small nuclear ribonucleoprotein A.
    
 0.996
TRAPUB_3602
Pre-mRNA-splicing factor RSE1.
   
 0.996
TRAPUB_3035
Pre-mRNA-splicing factor sap145.
   
 0.996
TRAPUB_13728
PHD finger-like domain-containing protein 5B.
    
 0.996
TRAPUB_12092
U2 snRNP component prp10.
    
 0.996
TRAPUB_11814
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
    
 0.996
TRAPUB_10935
Splicing factor 3B subunit 6-like protein.
   
 0.994
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.