STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_6696Protein GCN20. (683 aa)    
Predicted Functional Partners:
TRAPUB_8918
mRNA export factor elf1.
   
 
0.820
TRAPUB_14442
54S ribosomal protein L27, mitochondrial.
   
 
 0.804
TRAPUB_10167
60S ribosomal protein L25; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.799
TRAPUB_7362
54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
  
   0.797
TRAPUB_5565
60S ribosomal protein L35-3.
   
 
 0.796
TRAPUB_10507
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
   0.796
TRAPUB_10424
Elongation factor 3.
   
 
0.794
TRAPUB_5600
60S ribosomal protein L5-B.
   
 
 0.792
TRAPUB_7674
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.787
TRAPUB_13173
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 
 0.787
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.