STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_5747Uncharacterized protein. (581 aa)    
Predicted Functional Partners:
TRAPUB_12623
Uncharacterized protein.
    
 0.907
TRAPUB_13716
Pre-rRNA-processing protein IPI3.
   
 0.727
TRAPUB_6376
Uncharacterized protein.
    
 0.717
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.697
TRAPUB_4757
Myosin regulatory light chain.
    
 0.645
TRAPUB_13170
WSC domain-containing protein 2.
    
 0.641
TRAPUB_13139
Polynucleotide 5'-hydroxyl-kinase GRC3.
    
  0.627
TRAPUB_9428
Protein LAS1.
    
  0.623
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.621
TRAPUB_5361
Uncharacterized protein.
    
 0.619
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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