STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_5547LON peptidase N-terminal domain and RING finger protein 1. (293 aa)    
Predicted Functional Partners:
TRAPUB_2440
Ubiquitin-40S ribosomal protein S27a.
   
 0.884
TRAPUB_11618
Polyubiquitin 4.
    
 0.872
TRAPUB_2935
BRCT domain-containing protein.
    
 0.840
TRAPUB_12630
Ubiquitin-conjugating enzyme E2 35; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.827
TRAPUB_12060
BRCT-containing protein 1.
    
 0.790
TRAPUB_6433
Ubiquitin-60S ribosomal protein L40.
    
 0.785
TRAPUB_5614
RNA polymerase I-specific transcription initiation factor rrn7.
    
 0.785
TRAPUB_1205
Uncharacterized protein.
    
 0.785
TRAPUB_998
Cullin-1; Belongs to the cullin family.
    
 0.784
TRAPUB_11996
Cullin-3; Belongs to the cullin family.
    
 0.784
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.