STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_5009Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (563 aa)    
Predicted Functional Partners:
TRAPUB_11000
Nitrate reductase [NADH] 1.
    
 0.792
TRAPUB_8972
Nitrate reductase [NADH] 1.
    
 0.792
TRAPUB_13301
Ankyrin repeat protein nuc-2.
    
 0.768
TRAPUB_11276
U3 small nucleolar RNA-associated protein 20.
   
  0.709
TRAPUB_10250
WD repeat-containing protein 43.
    
 0.708
TRAPUB_10153
Nucleolar protein 58.
    
  0.706
TRAPUB_9079
U3 small nucleolar RNA-associated protein 4.
    
 0.701
TRAPUB_6748
WD repeat-containing protein 75.
    
  0.697
TRAPUB_13288
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
 0.697
TRAPUB_5143
DDB1-and CUL4-associated factor 13.
    
  0.691
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.