STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_4977WD repeat-containing protein 26. (710 aa)    
Predicted Functional Partners:
TRAPUB_1150
Ran-binding protein 10.
   
 
 0.994
TRAPUB_13461
Glucose-induced degradation protein 8-like protein.
    
 
 0.968
TRAPUB_454
Armadillo repeat-containing protein 8.
    
 
 0.940
TRAPUB_13731
Ubiquitin fusion degradation protein 4.
   
  
 0.932
TRAPUB_4383
LisH domain-containing protein C29A3.03c.
   
 
 0.910
TRAPUB_4382
Uncharacterized protein.
   
 
 0.910
TRAPUB_8020
Protein yippee-like; Belongs to the yippee family.
   
 
 0.854
TRAPUB_11713
Protein yippee-like; Belongs to the yippee family.
   
 
 0.854
TRAPUB_3077
Glucose-induced degradation protein 4-like protein.
    
 
 0.853
TRAPUB_2203
Protein ssh4.
   
 
 0.788
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.