STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_4124Diaminohydroxyphosphoribosylamino-pyrimidine deaminase. (342 aa)    
Predicted Functional Partners:
TRAPUB_10604
SET domain-containing protein 7.
    
 0.922
TRAPUB_4478
Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.
  
 
 0.745
TRAPUB_921
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
   
 
 0.685
TRAPUB_4450
Thymidylate synthase.
  
 
 0.630
TRAPUB_14102
Flavoprotein domain-containing protein.
  
 
 0.630
TRAPUB_8082
Thymidylate kinase.
    
 0.625
TRAPUB_2659
Metallophos domain-containing protein.
    
 0.605
TRAPUB_9257
Trifunctional nucleotide phosphoesterase protein YfkN; Belongs to the 5'-nucleotidase family.
    
 0.605
TRAPUB_5604
Endo/exonuclease/phosphatase domain-containing protein.
   
 
 0.603
TRAPUB_11749
Transposon TX1 uncharacterized 149 kDa protein.
   
 
 0.603
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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