STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_3738Formamidase. (309 aa)    
Predicted Functional Partners:
TRAPUB_10313
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
  
 0.980
TRAPUB_7786
DNA mismatch repair protein Mlh1.
    
 0.979
TRAPUB_6680
DNA mismatch repair protein msh-2; Component of the post-replicative DNA mismatch repair system (MMR).
  
 0.953
TRAPUB_10859
MutS protein-like protein.
  
 0.953
TRAPUB_272
Exodeoxyribonuclease 1.
   
 0.949
TRAPUB_12347
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
  
 0.941
TRAPUB_10573
MutS protein-like protein.
  
 0.941
TRAPUB_9596
MutS protein-like protein.
  
 0.940
TRAPUB_390
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.889
TRAPUB_8689
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.888
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.