STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_3727Amidohydro-rel domain-containing protein. (440 aa)    
Predicted Functional Partners:
TRAPUB_529
Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.889
TRAPUB_10228
DHO_dh domain-containing protein.
  
 0.889
TRAPUB_7594
Carbamoyl-phosphate synthase arginine-specific large chain.
  
 0.868
TRAPUB_2003
Carbamoyl-phosphate synthase arginine-specific small chain.
  
 0.868
TRAPUB_14326
Protein pyrABCN.
  
 0.868
TRAPUB_5867
Orotate phosphoribosyltransferase.
  
 
 0.811
TRAPUB_5169
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family.
  
 
 0.811
TRAPUB_11806
Purine permease.
  
  
 0.800
TRAPUB_8495
Tryptophan synthase.
  
 
  0.800
TRAPUB_2010
Uncharacterized protein.
  
 
 0.785
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.