STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_3367GTPase-activating protein gyp1. (410 aa)    
Predicted Functional Partners:
TRAPUB_14280
Uncharacterized protein.
    
   0.790
TRAPUB_167
GTP-binding protein ypt1.
    
 
 0.756
TRAPUB_13457
37S ribosomal protein S24, mitochondrial.
    
   0.681
TRAPUB_7558
Mitochondrial 37S ribosomal protein S27.
    
   0.657
TRAPUB_5984
Uncharacterized protein.
    
   0.657
TRAPUB_986
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
   0.657
TRAPUB_14407
54S ribosomal protein L51, mitochondrial.
    
   0.657
TRAPUB_11002
37S ribosomal protein S23, mitochondrial.
    
   0.657
TRAPUB_9475
54S ribosomal protein L4, mitochondrial.
    
   0.657
TRAPUB_2929
GTP-binding protein ypt1.
    
 
 0.609
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.