STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_3269Vegetative incompatibility protein HET-E-1. (873 aa)    
Predicted Functional Partners:
TRAPUB_10
UBA domain-containing protein 7.
   
 0.704
TRAPUB_5223
Myosin-2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.670
TRAPUB_12467
Uncharacterized protein.
   
 0.670
TRAPUB_13301
Ankyrin repeat protein nuc-2.
   
 0.667
TRAPUB_13214
Uncharacterized protein.
    
 0.661
TRAPUB_12623
Uncharacterized protein.
    
 0.660
TRAPUB_13223
Uncharacterized protein.
    
 0.646
TRAPUB_7778
annotation not available
   
 0.639
TRAPUB_9923
26S proteasome non-ATPase regulatory subunit 4-like protein.
    
 0.639
TRAPUB_13447
26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.636
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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