STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPUB_3255Polygalacturonase. (366 aa)    
Predicted Functional Partners:
TRAPUB_9648
Uncharacterized protein.
  
  
0.749
TRAPUB_10369
26S proteasome non-ATPase regulatory subunit 14-like protein.
    
 0.747
TRAPUB_4763
Fn3_like domain-containing protein.
    
 0.743
TRAPUB_7804
Alpha-L-AF_C domain-containing protein.
     
 0.729
TRAPUB_10631
Fungal_trans domain-containing protein.
     
 0.723
TRAPUB_259
Uncharacterized protein.
     
0.718
TRAPUB_4827
60S ribosomal protein L21-B.
   
   0.704
TRAPUB_486
Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.
    
 0.704
TRAPUB_1250
Uncharacterized protein.
    
 0.693
TRAPUB_1258
Mitochondrial import receptor subunit TOM40.
    
 0.693
Your Current Organism:
Trametes pubescens
NCBI taxonomy Id: 154538
Other names: T. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.